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--- coursews2425 [2025/01/08 20:03] – [Suggested Reading] vflanagin
+++ coursews2425 [2025/02/07 14:44] (current) – [Summary] vflanagin
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 ==== Summary ====
-An introduction to the theory and practice of functional and structural neuroimaging, with a combination of lectures, hands on experience with MRI, and data analysis methods including: functional magnetic resonance imaging (fMRI), morphometry and structural imaging including diffusion tensor imaging, simultaneous electroencephalography (EEG), and data analysis with e.g. SPM12, CAT12. This is a unique opportunity to get to know the newest techniques in the field of neuroimaging, and learn about the type of research that is being done in this area in a number of different faculties around Munich.
+An introduction to the theory and practice of functional and structural neuroimaging, with a combination of lectures, hands on experience with MRI, and data analysis methods including: functional magnetic resonance imaging (fMRI) - primarily task-based fMRI, morphometry and structural imaging including diffusion tensor imaging, and data analysis with e.g. SPM12, CAT12. This is a unique opportunity to get to know the newest techniques in the field of neuroimaging, and learn about the type of research that is being done in this area in a number of different faculties around Munich.
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   * [[http://www.fil.ion.ucl.ac.uk/spm/doc/books/hbf2|Human Brain Function, 2nd Edition]] -- PDF drafts of book chapters
+  * [[https://www.fil.ion.ucl.ac.uk/spm/doc/manual.pdf|SPM12 manual]], and [[https://www.fil.ion.ucl.ac.uk/spm/doc/|SPM documentation]], especially the [[https://www.fil.ion.ucl.ac.uk/spm/docs/|SPM tutorials]]
-  * [[https://www.fil.ion.ucl.ac.uk/spm/doc/manual.pdf|SPM12 manual]], and [[https://www.fil.ion.ucl.ac.uk/spm/doc/|SPM documentation]]
   * [[http://www.humanbrainmapping.org/COBIDASreport|COBIDAS Report]] (The part on preprocessing starts around pg. 53)
   * [[https://www.magnetomworld.siemens-healthineers.com/publications/mr-basics|Some Publications on MR Basics]]. Find the book //magnets, spins, and resonances// and other publications by Siemens for download on this webpage.
   * [[https://fmrif.nimh.nih.gov/index.php/SummerCourse|NIH Summer School on Neuroimaging]] Lectures slides on various aspects of MRI data collection and analysis
   * [[http://www.youtube.com/watch?v=snO68aJTOpM|Neuroanatomy lecture from Pinky and the Brain]]
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 ==== MRI Tutorials ====
-[[http://www.cis.rit.edu/htbooks/mri|The basics of MRI]] -- introduction to MRI by Joseph P. Hornak
+  * [[http://www.cis.rit.edu/htbooks/mri|The basics of MRI]] -- introduction to MRI by Joseph P. Hornak
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 ==== Software packages ====
-[[http://www.fmrib.ox.ac.uk/fsl/|FSL]] -- a software package for functional neuroimaging
+  * [[http://www.fmrib.ox.ac.uk/fsl/|FSL]] -- a software package for functional neuroimaging
+  * [[http://www.fil.ion.ucl.ac.uk/spm/|SPM]] -- a software package for functional neuroimaging
-[[http://www.fil.ion.ucl.ac.uk/spm/|SPM]] -- a software package for functional neuroimaging
+  * [[https://neuro-jena.github.io/cat12-help/|CAT12 Toolbox]] -- a computational neuroanatomy toolbox for SPM12
+  * [[https://www.nitrc.org/projects/mricron|MRIcro/MRIcron]] -- a software tool for image viewing and conversion
-[[https://neuro-jena.github.io/cat12-help/|CAT12 Toolbox]] -- a computational neuroanatomy toolbox for SPM12
+  * [[http://www.mathworks.de/products/matlab/ |Matlab]] -- Commercial, programming language and environment for data analysis and computation
-[[https://www.nitrc.org/projects/mricron|MRIcro/MRIcron]] -- a software tool for image viewing and conversion
-[[http://www.mathworks.de/products/matlab/ |Matlab]] -- Commercial, programming language and environment for data analysis and computation