| Both sides previous revisionPrevious revisionNext revision | Previous revision |
| coursews2526 [2025/09/05 12:43] – tstephan | coursews2526 [2026/03/17 11:03] (current) – [Summary] vflanagin |
|---|
| ==== Time and schedule ==== | ==== Time and schedule ==== |
| |
| |Date and time: |March 9 through 20, 2026, 09:00-17:00 | | |Date and time: |March 9 through 20, 2026, 09:30-18:00 | |
| | |tba., times may vary depending on availability of rooms and equipment | | | |tba., times may vary depending on availability of rooms and equipment | |
| |Schedule: |Block course, 10 days | | |Schedule: |Block course, 10 days | |
| |Location: |Room C00.027 and C00.031, Grosshadernerstr. 2, 82152 Martinsried (see Campus Martinsried website [[https://campusmartinsried.de/en/directions/]]) and the room finder: https://www.lmu.de/raumfinder/#/building/bw2970/map\\ | | |Location: |Room C00.031 and C00.027, Grosshadernerstr. 2, 82152 Martinsried (see Campus Martinsried website [[https://campusmartinsried.de/en/directions/]]) and the room finder: https://www.lmu.de/raumfinder/#/building/bw2970/map\\ | |
| |
| ==== Registration ==== | ==== Registration ==== |
| An introduction to the theory and practice of functional and structural neuroimaging, with a combination of lectures, hands on experience with MRI, and data analysis methods including: functional magnetic resonance imaging (fMRI) - primarily task-based fMRI, morphometry and structural imaging including diffusion tensor imaging, and data analysis with e.g. SPM12, CAT12. This is a unique opportunity to get to know the newest techniques in the field of neuroimaging, and learn about the type of research that is being done in this area in a number of different faculties around Munich. | An introduction to the theory and practice of functional and structural neuroimaging, with a combination of lectures, hands on experience with MRI, and data analysis methods including: functional magnetic resonance imaging (fMRI) - primarily task-based fMRI, morphometry and structural imaging including diffusion tensor imaging, and data analysis with e.g. SPM12, CAT12. This is a unique opportunity to get to know the newest techniques in the field of neuroimaging, and learn about the type of research that is being done in this area in a number of different faculties around Munich. |
| |
| | {{:coursews2526:ws2526_week1.png?900|WS202526 Week1}} |
| | |
| | {{:coursews2526:ws2526_week2_corr.png?900|WS202526 Week2 corrected}} |
| |
| **Goal:** The goal of this practical course is to give students the tools, knowledge and hands-on experience needed to plan, conduct, and analyse predominantly task-based fMRI experiments. | **Goal:** The goal of this practical course is to give students the tools, knowledge and hands-on experience needed to plan, conduct, and analyse predominantly task-based fMRI experiments. |
| |
| **Concept:** In the first week of the course, there will be theoretical lectures on the topics listed below. In addition, there will be guided tutorials on how to analyse fMRI and structural MRI data with SPM12. The tutorials are self-paced. In the second week, you will have to analyse a data set on your own (although we will be available if you have questions). You will be graded on a final report on this data set to be handed in by 18:00 on last day of the course. | **Concept:** In the first week of the course, there will be theoretical lectures on the topics listed below. In addition, there will be guided tutorials on how to analyse fMRI and structural MRI data with SPM12. The tutorials are self-paced. In the second week, you will have to analyse a data set on your own (although we will be available if you have questions). You will be graded on a final report on this data set to be handed in by 18:00 on last day of the course. |
| | |
| | |
| |
| | |
| * [[http://www.humanbrainmapping.org/COBIDASreport|COBIDAS Report]] (The part on preprocessing starts around pg. 53) | * [[http://www.humanbrainmapping.org/COBIDASreport|COBIDAS Report]] (The part on preprocessing starts around pg. 53) |
| * [[https://www.magnetomworld.siemens-healthineers.com/publications/mr-basics|Some Publications on MR Basics]]. Find the book //magnets, spins, and resonances// and other publications by Siemens for download on this webpage. | * [[https://www.magnetomworld.siemens-healthineers.com/publications/mr-basics|Some Publications on MR Basics]]. Find the book //magnets, spins, and resonances// and other publications by Siemens for download on this webpage. |
| * [[https://fmrif.nimh.nih.gov/index.php/SummerCourse|NIH Summer School on Neuroimaging]] Lectures slides on various aspects of MRI data collection and analysis | * [[https://www.frontiersin.org/journals/neuroimaging/articles/10.3389/fnimg.2022.1070151|Biswal FNIMG 2022]] A functional MRI pre-processing and quality control protocol based on statistical parametric mapping (SPM) and MATLAB |
| * [[http://www.youtube.com/watch?v=snO68aJTOpM|Neuroanatomy lecture from Pinky and the Brain]] | * [[http://www.youtube.com/watch?v=snO68aJTOpM|Neuroanatomy lecture from Pinky and the Brain]] |
| |
| * https://www.imaios.com/en/e-anatomy/brain/mri-axial-brain - an interactive tool to look at brain areas | * https://www.imaios.com/en/e-anatomy/brain/mri-axial-brain - an interactive tool to look at brain areas |
| * https://www.neuroanatomy.ca/ - also a good set of tools for neuroanatomy | * https://www.neuroanatomy.ca/ - also a good set of tools for neuroanatomy |
| | * https://youtu.be/Vaj7BBxqXt0?si=WY-JUcuzX5-q2yDV - How to create ROIs using fsleyes |
| |
| |
| * [[https://neuro-jena.github.io/cat12-help/|CAT12 Toolbox]] -- a computational neuroanatomy toolbox for SPM12 | * [[https://neuro-jena.github.io/cat12-help/|CAT12 Toolbox]] -- a computational neuroanatomy toolbox for SPM12 |
| * [[https://www.nitrc.org/projects/mricron|MRIcro/MRIcron]] -- a software tool for image viewing and conversion | * [[https://www.nitrc.org/projects/mricron|MRIcro/MRIcron]] -- a software tool for image viewing and conversion |
| * [[http://www.mathworks.de/products/matlab/ |Matlab]] -- Commercial, programming language and environment for data analysis and computation | * [[https://www.mathworks.com/products/matlab/ |Matlab]] -- Commercial, programming language and environment for data analysis and computation |
| |
