Neuroimaging

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{{logo_imaging_lab_nur_hirne.jpg|Neuroimaging Group}}

====== Practical course methods in functional imaging ======



==== Time and schedule ====

|Date and time: |January 16 through 27, 2023 |
|               |11:00 to 18:00, times may vary depending on availability of rooms and equipment |
|Schedule:      |Block course, 10 days |
|Location:      |Room C00.027, Grosshadernerstr. 2, 82152 Martinsried (see Campus Martinsried website [[http://www.biologie.uni-muenchen.de/anfahrt/index.html]]) and the room finder: https://www.lmu.de/raumfinder/#/building/bw2970/map\\ |

==== Registration ==== 
Please register by email to <neuroimaging@med.uni-muenchen.de>.

==== Summary ====  
An introduction to the theory and practice of functional and structural neuroimaging, with a combination of lectures, hands on experience with MRI, and data analysis methods including: functional magnetic resonance imaging (fMRI), morphometry and structural imaging including diffusion tensor imaging, simultaneous electroencephalography (EEG), and data analysis with e.g. SPM12, CAT12. This is a unique opportunity to get to know the newest techniques in the field of neuroimaging, and learn about the type of research that is being done in this area in a number of different faculties around Munich.

The time plan of the course is below and can be downloaded with the objectives {{::plan_ws202223.pdf |here}}.

{{::week1.jpg?800|Week 1}}

{{::week2.jpg?800|Week 2}}


==== FAQ COVID-19 ====
coming soon


==== FAQ Other ====
If you wish to read more about attendance, ECTS credits and missed hours, afternoons, weeks, in our list of 
[[imagingcourse_faq | frequently asked questions]].


^An upload link for the final projects will be added to the [[coursews2223:slides_ws2223 | restricted access section]].^

==== Session titles ====

  * The session titles can be found in the time plan above
==== Locations  ====
  * Room C00.027, Grosshadernerstr. 2, 82152 Martinsried (see Campus Martinsried Website [[http://www.biologie.uni-muenchen.de/anfahrt/index.html]], and the Room Finder at the LMU: [[https://www.lmu.de/raumfinder/#/building/bw2970/map]])
  * MRI Scanners, Campus Grosshadern, Marchioninistr. 15, 81377 München

==== List of speakers  ====

  * Dr. Rainer Bögle, Neurology
  * Prof. Dr. Olaf Dietrich, Clinical Radiology
  * Prof. Dr. Peter zu Eulenburg, DSGZ & Neuroradiology
  * Dr. Virginia Flanagin, DSGZ
  * Dr. Thomas Stephan, Neurology
  * PD Dr. Christian Vollmar, Neurology


==== Organizing Lab ====

Arbeitsgruppe fuer funktionelle, strukturelle und molekulare Bildgebung\\
Neurologie und DSGZ-LMU\\
Klinikum der Universität München – Großhadern\\
Fraunhoferstr. 20\\
82152 Planegg/Martinsried\\
<neuroimaging@med.uni-muenchen.de>


===== Downloads =====

**[[coursews2223:slides_ws2223   | Restricted access - slides and project information]]** 


==== Suggested Reading ====

  * [[http://www.fil.ion.ucl.ac.uk/spm/doc/books/hbf2|Human Brain Function, 2nd Edition]] -- PDF drafts of book chapters 

  * [[http://www.fil.ion.ucl.ac.uk/spm/doc/manual.pdf|SPM12 manual]]

  * [[http://www.humanbrainmapping.org/COBIDASreport|COBIDAS Report]] (The part on preprocessing starts around pg. 53)

  * [[https://www.magnetomworld.siemens-healthineers.com/publications/mr-basics|Some Publications on MR Basics]]. Find the book //magnets, spins, and resonances// and other publications by Siemens for download on this webpage.

  * [[http://www.youtube.com/watch?v=snO68aJTOpM|Neuroanatomy lecture from Pinky and the Brain]]

  * Poldrack et al. 2008 Guidelines for reporting and fMRI study. NeuroImage {{ ::guidelinesreportingfmristudy.pdf |PDF}}

==== MRI Tutorials ====

[[http://www.cis.rit.edu/htbooks/mri|The basics of MRI]] -- introduction to MRI by Joseph P. Hornak



==== Software packages ====

[[http://www.fmrib.ox.ac.uk/fsl/|FSL]] -- a software package for functional neuroimaging

[[http://www.fil.ion.ucl.ac.uk/spm/|SPM]] -- a software package for functional neuroimaging

[[http://www.neuro.uni-jena.de/cat/|CAT12 Toolbox]] -- a computational neuroanatomy toolbox for SPM12

[[https://www.nitrc.org/projects/mricron|MRIcro/MRIcron]] -- a software tool for image viewing and conversion

[[http://www.mathworks.de/products/matlab/ |Matlab]] -- Commercial, programming language and environment for data analysis and computation